估计阅读时长: 6 分钟 访问在线服务： http://metdna.zhulab.cn/ Metabolite identification is the long-standing challenge for liquid chromatography-mass spectrometry (LC-MS)-based untargeted metabolomics. Here, […]
Recent Posts
Archives
- November 2023 (1)
- June 2023 (2)
- May 2023 (2)
- April 2023 (2)
- March 2023 (2)
- February 2023 (1)
- August 2022 (2)
- July 2022 (2)
- June 2022 (5)
- May 2022 (5)
- April 2022 (4)
- March 2022 (3)
- January 2022 (2)
- December 2021 (2)
- November 2021 (2)
- October 2021 (6)
- September 2021 (8)
- August 2021 (8)
- July 2021 (6)
- June 2021 (20)
- May 2021 (10)
博客文章
| S | M | T | W | T | F | S |
|---|---|---|---|---|---|---|
| 1 | 2 | |||||
| 3 | 4 | 5 | 6 | 7 | 8 | 9 |
| 10 | 11 | 12 | 13 | 14 | 15 | 16 |
| 17 | 18 | 19 | 20 | 21 | 22 | 23 |
| 24 | 25 | 26 | 27 | 28 | 29 | 30 |
| 31 | ||||||
Tags
algorithm (32)
bilibili (3)
binary tree (3)
Chromatography (3)
clustering (19)
contour (3)
Darwinism (4)
dataframe (3)
data visualization (22)
dotnet-core (25)
GCModeller (19)
gdi+ (21)
ggplot (14)
graph (14)
heatmap (3)
html (3)
http (3)
image processing (7)
kegg (5)
kmeans (3)
language (7)
linq (3)
linux (7)
machine learning (3)
mass spectrometry (11)
math (18)
MSI (4)
mzkit (18)
network (8)
pathway (3)
pipeline (4)
query (5)
R# (41)
rsharp (22)
scripting (14)
single-cell (6)
sql (3)
symbolic computation (3)
text processing (4)
typescript (3)
ubuntu (3)
uniprot (3)
vb (16)
VisualBasic (45)
webassembly (3)
waiting and waiting.
Cool + for the post
老师提到的这个问题，我这几天会写一个使用教程，老师后面可以用教程中对应的demo示例来了解下功能的使用
空间Spot结果在下载到的mzkit文件夹中有示例吗？我试了试，不是10X结果中的tissue_positions_list.csv（软件选择此文件，直接error）；在默认结果中也没找到类似的文件；
目前软件上提供了用于手动关联空间转录组数据和空间代谢组数据的功能，使用具体的功能可以通过成像画布上通过右键菜单依次打开【Samples】->【Add Spatial Tile】加载Space Ranger的空间斑点结果：在软件上进行手动旋转调整位置完成两个空间组学之间的空间位置关联，然后老师这边拿到空间位置关联信息后，就可以按照斑点的空间位置对应关系导出表达数据做关联分析了